For example, on one of my work boxes, here are all the directories under /usr/ $ lsl -la /usrĭrwxr-xr-x 14 root root 4.0K Mar 10 12:05. I have never previously encountered this issue with Bioconductor on other machines (Mac, Linux/PopOS 20.04)

I have only successfully installed BiocManager and BiocVersion but no packages. I also tried re-installing BiocManager as suggested - no change, but this was a fresh install to begin with. I tried the ghost-binary-repo code but it is no longer posted there. those directories all exist in that location. So if I try getOption > getOption('repos') Installation paths not writeable, unable to update packagesĬluster, Matrix, mgcv, nlme, spatial, survival 'getOption('repos')' replaces Bioconductor standard repositories, seeīioconductor version 3.14 (BiocManager 1.30.16), R 4.1.3 () I get the following > BiocManager::install() That is a fresh install on a new computer - no updating. Besides that, don’t forget to subscribe to my email newsletter to get updates on the newest tutorials.I am also having this issue installing Bioconductor on fresh new Linux (x86_64-pc-linux-gnu (64-bit), PopOS 21.10) R is 4.1.3. In case you have additional questions, let me know in the comments section below. Summary: Do you sometimes wonder how to know if a package is installed in R? In this article, I illustrated how to verify whether an R add-on package is installed and how to install it automatically in an elegant way in case it is not there. Introduction to the pacman Package in R.Find Out Which Package Version is Loaded in R.

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Rstudio install package